RNA-Seq of N. caerulescens La Calamine accession Shoot under Cd - SRA

SRX4707106: RNA-Seq of N. caerulescens La Calamine accession Shoot under Cd
1 ILLUMINA (Illumina HiSeq 2000) run: 15.1M spots, 1.5G bases, 976.7Mb downloads

Design: Total RNA was extracted using RNeasy Plant Mini kit (Qiagen). RNA samples were analyzed using Bioanalyzer (Agilent) to ensure adequate RNA quality and quantity. RNA libraries were prepared using Illumina TruSeq RNA-Seq Sample Prep Kit following manufacturer's instructions. Libraries were pooled, multiplexed and sequenced using the Paired End Clustering protocol with 51x2 cycles.

Submitted by: University of Eastern Finland

Study: Root and shoot transcriptomes of two Noccaea caerulescens accessions exposed to cadmium.

PRJNA491621 • SRP161978 • All experiments • All runs

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The aim of this study was to compare Cd responses and allocation at a similar plant-internal Cd concentration between N. caerulescens accessions Ganges and La Calamine, in order to better understand why these accessions exhibit contrasting adaptations to calamine soil. To this end we compared the distribution of Cd over leaf tissues and cell types, as well as the Cd-induced transcriptomes of roots and shoots.

Sample:

SAMN10080780 • SRS3792826 • All experiments • All runs

Organism: Noccaea caerulescens

Library:

Name: LC3CdS

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 15.1M spots, 1.5G bases, 976.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR7867917	15,072,304	1.5G	976.7Mb	2018-09-20

ID:: 6373408

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